Chocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
Introduction
Chocolate Thumbprint Cookies are rich, fudgy treats with a silky chocolate ganache filling. These delightful cookies combine a tender cocoa dough with a luscious center, perfect for any chocolate lover’s craving.

Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top (optional)
Instructions
- Step 1: Line two baking sheets with parchment paper and set aside.
- Step 2: In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder. Set aside.
- Step 3: In a large bowl, cream the softened butter, brown sugar, and granulated sugar with an electric mixer for about two minutes until smooth.
- Step 4: Add the egg yolks and vanilla to the butter mixture and beat until pale and fluffy, about 1-2 minutes.
- Step 5: Gradually mix in the dry ingredients just until combined.
- Step 6: Scoop the dough into 34 portions (about 1 tablespoon each) and roll into balls. Transfer the balls to the prepared baking sheets.
- Step 7: Using a 1/4 teaspoon, press down on each dough ball to create an indent for the filling.
- Step 8: Chill the indented dough balls for at least one hour. You can chill all dough together and separate onto baking sheets before baking.
- Step 9: Preheat the oven to 350°F (175°C). Arrange the dough balls about 1 1/2 inches apart on the baking sheets.
- Step 10: Bake for 9-11 minutes, ideally 10, until set but still soft in the center.
- Step 11: Immediately after baking, gently press the centers again with a 1/4 teaspoon to deepen the indent. Use a circular cookie cutter to gently reshape the cookies while warm, returning them to their original size.
- Step 12: Let cookies cool on the baking sheet for 5 minutes, then transfer to a cooling rack to cool completely.
- Step 13: For the ganache, place the chocolate chips in a small bowl.
- Step 14: Heat the heavy cream until just about boiling, either in the microwave or on the stove.
- Step 15: Pour the hot cream over the chocolate chips and let sit for 1 minute.
- Step 16: Stir until smooth and combined.
- Step 17: Spoon about 1 teaspoon of ganache into each cookie indent, filling more if possible.
- Step 18: Optionally, sprinkle nonpareils or sprinkles over the ganache.
- Step 19: Chill the cookies in the fridge for 10-15 minutes to allow the ganache to set before serving.
Tips & Variations
- Use Dutch-process cocoa for a richer, deeper chocolate flavor.
- For a twist, try filling the centers with flavored ganache like mint or orange.
- Chilling the dough helps maintain the cookie shape and makes pressing the thumbprint easier.
- Nonpareils add a fun texture and festive look but can be omitted for a classic presentation.
Storage
Store leftover cookies in an airtight container in the refrigerator for up to three days. Before serving, bring them to room temperature or enjoy them chilled. The ganache may firm up in the fridge but softens nicely at room temperature.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I freeze these cookies?
Yes, you can freeze baked and cooled cookies without ganache in an airtight container for up to 2 months. Add the ganache after thawing and chilling before serving.
What can I use instead of egg yolks?
Egg yolks add richness and help bind the dough. For egg-free alternatives, try using a commercial egg replacer or mashed avocado, though texture and flavor will vary slightly.
PrintChocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
These Chocolate Thumbprint Cookies are rich, fudgy, and perfectly indulgent treats featuring a soft cocoa cookie base filled with smooth, creamy ganache. With a simple chocolate dough that is chilled for perfect texture and a luscious chocolate ganache filling, these cookies are an irresistible delight for chocolate lovers and are easy to prepare for any occasion.
- Prep Time: 20 minutes
- Cook Time: 11 minutes
- Total Time: 1 hour 31 minutes
- Yield: 34 cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
Ingredients
Dry Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
Wet Ingredients
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
Chocolate Ganache
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
Optional Toppings
- Nonpareils for sprinkling on top (optional)
Instructions
- Prepare Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, cocoa powder, salt, and baking powder until fully combined. Set aside.
- Cream Butter and Sugars: In a large bowl, use an electric mixer to cream the softened butter with the light brown sugar and granulated white sugar for about two minutes until light and fluffy.
- Add Egg Yolks and Vanilla: Mix in the room temperature egg yolks and vanilla bean paste or extract. Continue mixing for 1-2 minutes until the mixture becomes pale and fluffy.
- Combine Wet and Dry Ingredients: Gradually add the dry ingredient mixture to the wet ingredients and mix just until combined, being careful not to overmix to keep the cookies tender.
- Form Dough Balls and Indent: Using about 1 tablespoon of dough per cookie, scoop out 34 portions and roll each into a ball. Place the balls on prepared baking sheets lined with parchment paper. Press down gently on each ball with a 1/4 teaspoon to create an indent.
- Chill the Dough: Chill the prepared dough balls for at least one hour. You can chill all the dough together on one baking sheet and separate onto multiple sheets prior to baking.
- Preheat Oven: Preheat your oven to 350°F (175°C).
- Bake Cookies: Arrange the chilled dough balls about 1 1/2 inches apart on baking sheets. Bake for 9-11 minutes, with 10 minutes being ideal, until cookies are set.
- Re-shape Indents: Immediately after baking, press down on the cookie centers again with a 1/4 teaspoon to deepen the indents, and optionally use a circular cookie cutter around the edges while the cookies are still warm to create a perfect round shape and restore size.
- Cool Cookies: Let the cookies cool on the baking sheet for 5 minutes before transferring them to a wire rack to cool completely.
- Prepare Ganache: Place the semi-sweet chocolate chips in a small bowl. Heat heavy cream on the stove or in the microwave until just about boiling. Pour the hot cream over the chocolate chips and let sit for 1 minute, then stir until smooth and glossy.
- Fill Cookies: Spoon about 1 teaspoon of the warm ganache into each cookie’s indent, filling generously if space allows.
- Add Toppings and Chill: Sprinkle nonpareils or desired sprinkles on top if using. Chill the filled cookies in the refrigerator for 10-15 minutes to allow the ganache to set.
- Storage: Store leftover cookies in an airtight container at room temperature or in the fridge for up to three days to maintain freshness.
Notes
- Spoon and level flour when measuring for accurate amounts to avoid dry or dense cookies.
- Use room temperature egg yolks to ensure they incorporate smoothly into the butter and sugar mixture.
- Chilling the dough is essential for maintaining the cookie shape and texture during baking.
- If you don’t have vanilla bean paste, pure vanilla extract is a perfect substitute.
- The ganache can be customized with dark or milk chocolate depending on your preference.
- Nonpareils add a festive touch and slight crunch but can be omitted if desired.
Keywords: Chocolate Thumbprint Cookies, chocolate cookies, thumbprint cookies, ganache cookies, cocoa cookies, homemade chocolate cookies, chocolate dessert

